diff --git a/configure.ac b/configure.ac
index 663e45a..f4a3854 100644
--- a/configure.ac
+++ b/configure.ac
@@ -13,7 +13,7 @@ dnl from the use of this software.
 
 AC_PREREQ([2.68])
 AC_INIT([pkgconf], [1.4.2], [http://github.com/pkgconf/pkgconf/issues])
-AC_CONFIG_SRCDIR([main.c])
+AC_CONFIG_SRCDIR([cli/main.c])
 AC_CONFIG_MACRO_DIRS([m4])
 AX_CHECK_COMPILE_FLAG([-Wall], [CFLAGS="$CFLAGS -Wall"])
 AX_CHECK_COMPILE_FLAG([-Wextra], [CFLAGS="$CFLAGS -Wextra"])